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Updating Konduktor is quite simple. All you need to do is pull the latest changes from the repository at the installation directory and run: 
./update.sh
This will pull the latest changes if you didn’t already, reinstall the server, rebuild the UI and the CLI, run migrations, and restart the server if running via systemd. If you’re managing the running of the server yourself, you’ll then need to run konduktor-server start again.